User guides

These guides cover the decisions and data conventions needed for indexing, reconstruction and monochromatic image reduction.

• Geometry
• Crystals
• Frame input
• Parameters
• Run the indexing stages separately
• Refine deviatoric lattice strain
• Calibrate a detector
• Results
• Results files
• Batch indexing
• Reconstruct a wire scan
• Inspect a reconstructed point
• Plot intensity versus Q from a monochromatic image
• Visualization data
• Simulate detector reflections
• Add simulation to a detector view
• Error handling

Read Geometry, Crystals, and Frame input to prepare experiment inputs. Use Parameters to configure processing. To compare settings or investigate results at each stage, see Run the indexing stages separately. Results defines the returned arrays and their relationships, and Results files describes the HDF5 output for a whole run.

Use Reconstruct a wire scan for depth-resolved reconstruction and Inspect a reconstructed point for reference images, square ROIs and intensity through depth. Plot intensity versus Q describes monochromatic image reduction. Calibrate a detector fits a detector’s geometry to a frame of a calibration crystal. Simulation, detector-view simulation and Visualization data cover reflection prediction and plotting.